PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_163D42961.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 939aa    MW: 106207 Da    PI: 8.0257
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_163D42961.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.66.4e-21190273190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            k+Y +YA +vGFsvrk    k+ ++g   +r +vCs+eg+r+++  k     r+ +etrtgC a++ + ++ +gk++vt+++++HnH+
  Traes_2AL_163D42961.1 190 KYYVSYAGNVGFSVRKGLWDKTAKSG-SRSRFYVCSREGFRAKNLPK-----RPYPETRTGCPARFSIMLTPSGKYRVTEFVQDHNHQ 271
                            69********************8888.8999***********98877.....9*********************************** PP

                   FAR1  89 la 90 
                            la
  Traes_2AL_163D42961.1 272 LA 273
                            96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.3E-18190273IPR004330FAR1 DNA binding domain
PfamPF105511.3E-28370463IPR018289MULE transposase domain
PROSITE profilePS509669.841637684IPR007527Zinc finger, SWIM-type
PfamPF044347.1E-4658682IPR007527Zinc finger, SWIM-type
SMARTSM005756.8E-4659686IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 939 aa     Download sequence    Send to blast
MATTSGGGAA GDPAASSPAP SQPQHPTPRI SHIVRTYLDL SSNSKKRRAA RKNQLKPGGV  60
ETSAAGENKG CGPSGAASLE HSRLLRELGI RVSRYTNEER RDIITRYMQK RSGRQGVNRA  120
AAKVPSRQAL AERRRRSAGG QFLGKEDPQT ADKPEEKAEE EPELPPEVVA NAGGVPIIGM  180
VFESEEKACK YYVSYAGNVG FSVRKGLWDK TAKSGSRSRF YVCSREGFRA KNLPKRPYPE  240
TRTGCPARFS IMLTPSGKYR VTEFVQDHNH QLAGPIDIGM LKSQRLLSKV QSGNGNAISI  300
PPRYKNYLRT KPTKDMNAGD FRDLTDYFRS MKSDNPSFYY AIQVDENDKA ANVFWADARS  360
IFDYHYFSDV ICFDMTYKLN DYSRPLALFL GINHHRQMVI FGAAFLYDET AESFKWLLET  420
FKSAMCGKQP KTILTDQSAA LKEALDLAWP GTVHRYCLWQ IYQDAVKSLA HVFCISEEFT  480
HDFSHCVFDV EDGQEFVETW NVIMEKYNLK ENKLLNELYE DRENWALPYG RQIFSGDIKS  540
MVRAETLGIR MKEYLDCEKE LSPFLKFFGS SVEKRRQEEI QADYQASQRE PRTPLPLLWQ  600
AANLYTPINF ELFRKEYEEC MDCMVYGCGE FGSLSEYMIT FKNRTKEQLV RFDSSDGTVA  660
CTCKKFETAG ILCCHILKVY ELKNVKEIPL QYLLKRWSKD AKLGTVHEIN GFSFDSHIGS  720
CVPERYAALC RLFYKIASKA AANVETFSMV ASQSDQLNEG IERTLQSTLA AKSSVVHSIK  780
DQLTRMVQND YPLGNSSEPQ KSTGKKMSEV TRRGNCQETN KRQKQRKGHS GEAAAGPRER  840
EVNVTDQFLP DQPMQGHYVL GHNFGLSTSQ NLRDNLNHFD QASAVPTLQQ QPFPGNGELT  900
ETQAYTGDMH ALQFMETNPQ IDHENGEEGQ SSIPVWDFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2485280.0AK248528.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf51g04, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240422.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
TrEMBLW5APT70.0W5APT7_WHEAT; Uncharacterized protein
STRINGMLOC_74600.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-104FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]